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Monogenic diabetes syndromes: Locus-specific databases for Alström, Wolfram, and Thiamine-responsive megaloblastic anemia.

Identifieur interne : 000778 ( PubMed/Checkpoint ); précédent : 000777; suivant : 000779

Monogenic diabetes syndromes: Locus-specific databases for Alström, Wolfram, and Thiamine-responsive megaloblastic anemia.

Auteurs : Dewi Astuti [Royaume-Uni] ; Ataf Sabir [Royaume-Uni] ; Piers Fulton [Royaume-Uni] ; Malgorzata Zatyka [Royaume-Uni] ; Denise Williams [Royaume-Uni] ; Carol Hardy [Royaume-Uni] ; Gabriella Milan [Italie] ; Francesca Favaretto [Italie] ; Patrick Yu-Wai-Man [Royaume-Uni] ; Julia Rohayem [Allemagne] ; Miguel L Pez De Heredia [Espagne] ; Tamara Hershey [États-Unis] ; Lisbeth Tranebjaerg [Danemark] ; Jian-Hua Chen [Royaume-Uni] ; Annabel Chaussenot [France] ; Virginia Nunes [Espagne] ; Bess Marshall [États-Unis] ; Susan Mcafferty [Royaume-Uni] ; Vallo Tillmann [Estonie] ; Pietro Maffei [Italie] ; Veronique Paquis-Flucklinger [France] ; Tarekign Geberhiwot [Royaume-Uni] ; Wojciech Mlynarski [Pologne] ; Kay Parkinson [Royaume-Uni] ; Virginie Picard [France] ; Gema Esteban Bueno [Espagne] ; Renuka Dias [Royaume-Uni] ; Amy Arnold [Royaume-Uni] ; Caitlin Richens [Royaume-Uni] ; Richard Paisey [Royaume-Uni] ; Fumihiko Urano [États-Unis] ; Robert Semple [Royaume-Uni] ; Richard Sinnott [Australie] ; Timothy G. Barrett [Royaume-Uni]

Source :

RBID : pubmed:28432734

Abstract

We developed a variant database for diabetes syndrome genes, using the Leiden Open Variation Database platform, containing observed phenotypes matched to the genetic variations. We populated it with 628 published disease-associated variants (December 2016) for: WFS1 (n = 309), CISD2 (n = 3), ALMS1 (n = 268), and SLC19A2 (n = 48) for Wolfram type 1, Wolfram type 2, Alström, and Thiamine-responsive megaloblastic anemia syndromes, respectively; and included 23 previously unpublished novel germline variants in WFS1 and 17 variants in ALMS1. We then investigated genotype-phenotype relations for the WFS1 gene. The presence of biallelic loss-of-function variants predicted Wolfram syndrome defined by insulin-dependent diabetes and optic atrophy, with a sensitivity of 79% (95% CI 75%-83%) and specificity of 92% (83%-97%). The presence of minor loss-of-function variants in WFS1 predicted isolated diabetes, isolated deafness, or isolated congenital cataracts without development of the full syndrome (sensitivity 100% [93%-100%]; specificity 78% [73%-82%]). The ability to provide a prognostic prediction based on genotype will lead to improvements in patient care and counseling. The development of the database as a repository for monogenic diabetes gene variants will allow prognostic predictions for other diabetes syndromes as next-generation sequencing expands the repertoire of genotypes and phenotypes. The database is publicly available online at https://lovd.euro-wabb.org.

DOI: 10.1002/humu.23233
PubMed: 28432734


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pubmed:28432734

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<name sortKey="Milan, Gabriella" sort="Milan, Gabriella" uniqKey="Milan G" first="Gabriella" last="Milan">Gabriella Milan</name>
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<nlm:affiliation>Department of Clinical Genetics, University Hospital/The Kennedy Centre, Glostrup, Denmark.</nlm:affiliation>
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<name sortKey="Chen, Jian Hua" sort="Chen, Jian Hua" uniqKey="Chen J" first="Jian-Hua" last="Chen">Jian-Hua Chen</name>
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<wicri:regionArea>University of Cambridge Metabolic Research Laboratories, Wellcome Trust-MRC Institute of Metabolic Science, Box 289, Addenbrooke's Hospital, Cambridge</wicri:regionArea>
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<name sortKey="Chaussenot, Annabel" sort="Chaussenot, Annabel" uniqKey="Chaussenot A" first="Annabel" last="Chaussenot">Annabel Chaussenot</name>
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<country xml:lang="fr">France</country>
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<name sortKey="Marshall, Bess" sort="Marshall, Bess" uniqKey="Marshall B" first="Bess" last="Marshall">Bess Marshall</name>
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<name sortKey="Mcafferty, Susan" sort="Mcafferty, Susan" uniqKey="Mcafferty S" first="Susan" last="Mcafferty">Susan Mcafferty</name>
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<nlm:affiliation>Department of Medicine (DIMED), University of Padua, Padua, Italy.</nlm:affiliation>
<country xml:lang="fr">Italie</country>
<wicri:regionArea>Department of Medicine (DIMED), University of Padua, Padua</wicri:regionArea>
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<name sortKey="Paquis Flucklinger, Veronique" sort="Paquis Flucklinger, Veronique" uniqKey="Paquis Flucklinger V" first="Veronique" last="Paquis-Flucklinger">Veronique Paquis-Flucklinger</name>
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<nlm:affiliation>School of Medicine, IRCAN, UMR CNRS 7284/INSERM U1081/UNS, Nice Sophia-Antipolis University, Nice, France.</nlm:affiliation>
<country xml:lang="fr">France</country>
<wicri:regionArea>School of Medicine, IRCAN, UMR CNRS 7284/INSERM U1081/UNS, Nice Sophia-Antipolis University, Nice</wicri:regionArea>
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<name sortKey="Geberhiwot, Tarekign" sort="Geberhiwot, Tarekign" uniqKey="Geberhiwot T" first="Tarekign" last="Geberhiwot">Tarekign Geberhiwot</name>
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<nlm:affiliation>Department of Metabolism, University Hospitals Birmingham NHS Foundation Trust, Queen Elizabeth Hospital, Queen Elizabeth Medical Centre, Birmingham, UK.</nlm:affiliation>
<country xml:lang="fr">Royaume-Uni</country>
<wicri:regionArea>Department of Metabolism, University Hospitals Birmingham NHS Foundation Trust, Queen Elizabeth Hospital, Queen Elizabeth Medical Centre, Birmingham</wicri:regionArea>
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<settlement type="city">Birmingham</settlement>
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<name sortKey="Mlynarski, Wojciech" sort="Mlynarski, Wojciech" uniqKey="Mlynarski W" first="Wojciech" last="Mlynarski">Wojciech Mlynarski</name>
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<nlm:affiliation>Department of Paediatrics, Medical University of Lodz, Lodz, Poland.</nlm:affiliation>
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<wicri:regionArea>Department of Paediatrics, Medical University of Lodz, Lodz</wicri:regionArea>
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<author>
<name sortKey="Parkinson, Kay" sort="Parkinson, Kay" uniqKey="Parkinson K" first="Kay" last="Parkinson">Kay Parkinson</name>
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<nlm:affiliation>Alström Syndrome Europe, Woodpecker Cottage, Paignton, S. Devon, UK.</nlm:affiliation>
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<name sortKey="Picard, Virginie" sort="Picard, Virginie" uniqKey="Picard V" first="Virginie" last="Picard">Virginie Picard</name>
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<nlm:affiliation>Association syndrome de Wolfram, Residence Gauguin, Grand-Champ, France.</nlm:affiliation>
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<author>
<name sortKey="Bueno, Gema Esteban" sort="Bueno, Gema Esteban" uniqKey="Bueno G" first="Gema Esteban" last="Bueno">Gema Esteban Bueno</name>
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<nlm:affiliation>Unidad de Géstion Clínica de Garrucha, Área de Gestión Sanitaria Norte de Almería, Avd. Dra. Parra, Almería, Spain.</nlm:affiliation>
<country xml:lang="fr">Espagne</country>
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<author>
<name sortKey="Dias, Renuka" sort="Dias, Renuka" uniqKey="Dias R" first="Renuka" last="Dias">Renuka Dias</name>
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<nlm:affiliation>Birmingham Women's and Children's Hospital, Birmingham, UK.</nlm:affiliation>
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<wicri:regionArea>Birmingham Women's and Children's Hospital, Birmingham</wicri:regionArea>
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<settlement type="city">Birmingham</settlement>
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<author>
<name sortKey="Arnold, Amy" sort="Arnold, Amy" uniqKey="Arnold A" first="Amy" last="Arnold">Amy Arnold</name>
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<nlm:affiliation>Birmingham Women's and Children's Hospital, Birmingham, UK.</nlm:affiliation>
<country xml:lang="fr">Royaume-Uni</country>
<wicri:regionArea>Birmingham Women's and Children's Hospital, Birmingham</wicri:regionArea>
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<author>
<name sortKey="Richens, Caitlin" sort="Richens, Caitlin" uniqKey="Richens C" first="Caitlin" last="Richens">Caitlin Richens</name>
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<nlm:affiliation>Birmingham Women's and Children's Hospital, Birmingham, UK.</nlm:affiliation>
<country xml:lang="fr">Royaume-Uni</country>
<wicri:regionArea>Birmingham Women's and Children's Hospital, Birmingham</wicri:regionArea>
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<settlement type="city">Birmingham</settlement>
<region type="country">Angleterre</region>
<region type="région" nuts="1">Midlands de l'Ouest</region>
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<author>
<name sortKey="Paisey, Richard" sort="Paisey, Richard" uniqKey="Paisey R" first="Richard" last="Paisey">Richard Paisey</name>
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<nlm:affiliation>Diabetes Research Unit, Horizon Centre, Torbay Hospital NHS Foundation Trust, Devon, UK.</nlm:affiliation>
<country xml:lang="fr">Royaume-Uni</country>
<wicri:regionArea>Diabetes Research Unit, Horizon Centre, Torbay Hospital NHS Foundation Trust, Devon</wicri:regionArea>
<wicri:noRegion>Devon</wicri:noRegion>
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</author>
<author>
<name sortKey="Urano, Fumihiko" sort="Urano, Fumihiko" uniqKey="Urano F" first="Fumihiko" last="Urano">Fumihiko Urano</name>
<affiliation wicri:level="2">
<nlm:affiliation>Department of Medicine, Division of Endocrinology, Metabolism, and Lipid Research, Washington University School of Medicine, St. Louis, Missouri.</nlm:affiliation>
<country xml:lang="fr">États-Unis</country>
<placeName>
<region type="state">Missouri (État)</region>
</placeName>
<wicri:cityArea>Department of Medicine, Division of Endocrinology, Metabolism, and Lipid Research, Washington University School of Medicine, St. Louis</wicri:cityArea>
</affiliation>
</author>
<author>
<name sortKey="Semple, Robert" sort="Semple, Robert" uniqKey="Semple R" first="Robert" last="Semple">Robert Semple</name>
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<nlm:affiliation>University of Cambridge Metabolic Research Laboratories, Wellcome Trust-MRC Institute of Metabolic Science, Box 289, Addenbrooke's Hospital, Cambridge, UK.</nlm:affiliation>
<country xml:lang="fr">Royaume-Uni</country>
<wicri:regionArea>University of Cambridge Metabolic Research Laboratories, Wellcome Trust-MRC Institute of Metabolic Science, Box 289, Addenbrooke's Hospital, Cambridge</wicri:regionArea>
<wicri:noRegion>Cambridge</wicri:noRegion>
</affiliation>
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<name sortKey="L Pez De Heredia, Miguel" sort="L Pez De Heredia, Miguel" uniqKey="L Pez De Heredia M" first="Miguel" last="L Pez De Heredia">Miguel L Pez De Heredia</name>
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<country xml:lang="fr">États-Unis</country>
<placeName>
<region type="state">Missouri (État)</region>
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<author>
<name sortKey="Tranebjaerg, Lisbeth" sort="Tranebjaerg, Lisbeth" uniqKey="Tranebjaerg L" first="Lisbeth" last="Tranebjaerg">Lisbeth Tranebjaerg</name>
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<nlm:affiliation>University of Cambridge Metabolic Research Laboratories, Wellcome Trust-MRC Institute of Metabolic Science, Box 289, Addenbrooke's Hospital, Cambridge, UK.</nlm:affiliation>
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<wicri:regionArea>University of Cambridge Metabolic Research Laboratories, Wellcome Trust-MRC Institute of Metabolic Science, Box 289, Addenbrooke's Hospital, Cambridge</wicri:regionArea>
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<region type="state">Missouri (État)</region>
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<country xml:lang="fr">France</country>
<wicri:regionArea>School of Medicine, IRCAN, UMR CNRS 7284/INSERM U1081/UNS, Nice Sophia-Antipolis University, Nice</wicri:regionArea>
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<region type="region">Provence-Alpes-Côte d'Azur</region>
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<name sortKey="Geberhiwot, Tarekign" sort="Geberhiwot, Tarekign" uniqKey="Geberhiwot T" first="Tarekign" last="Geberhiwot">Tarekign Geberhiwot</name>
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<name sortKey="Mlynarski, Wojciech" sort="Mlynarski, Wojciech" uniqKey="Mlynarski W" first="Wojciech" last="Mlynarski">Wojciech Mlynarski</name>
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<country xml:lang="fr">Pologne</country>
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<name sortKey="Parkinson, Kay" sort="Parkinson, Kay" uniqKey="Parkinson K" first="Kay" last="Parkinson">Kay Parkinson</name>
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<nlm:affiliation>Association syndrome de Wolfram, Residence Gauguin, Grand-Champ, France.</nlm:affiliation>
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<name sortKey="Dias, Renuka" sort="Dias, Renuka" uniqKey="Dias R" first="Renuka" last="Dias">Renuka Dias</name>
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<name sortKey="Arnold, Amy" sort="Arnold, Amy" uniqKey="Arnold A" first="Amy" last="Arnold">Amy Arnold</name>
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<nlm:affiliation>Birmingham Women's and Children's Hospital, Birmingham, UK.</nlm:affiliation>
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<placeName>
<settlement type="city">Birmingham</settlement>
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<name sortKey="Richens, Caitlin" sort="Richens, Caitlin" uniqKey="Richens C" first="Caitlin" last="Richens">Caitlin Richens</name>
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<nlm:affiliation>Birmingham Women's and Children's Hospital, Birmingham, UK.</nlm:affiliation>
<country xml:lang="fr">Royaume-Uni</country>
<wicri:regionArea>Birmingham Women's and Children's Hospital, Birmingham</wicri:regionArea>
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<country xml:lang="fr">Royaume-Uni</country>
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<nlm:affiliation>Department of Medicine, Division of Endocrinology, Metabolism, and Lipid Research, Washington University School of Medicine, St. Louis, Missouri.</nlm:affiliation>
<country xml:lang="fr">États-Unis</country>
<placeName>
<region type="state">Missouri (État)</region>
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<author>
<name sortKey="Semple, Robert" sort="Semple, Robert" uniqKey="Semple R" first="Robert" last="Semple">Robert Semple</name>
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<country xml:lang="fr">Royaume-Uni</country>
<wicri:regionArea>University of Cambridge Metabolic Research Laboratories, Wellcome Trust-MRC Institute of Metabolic Science, Box 289, Addenbrooke's Hospital, Cambridge</wicri:regionArea>
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<name sortKey="Sinnott, Richard" sort="Sinnott, Richard" uniqKey="Sinnott R" first="Richard" last="Sinnott">Richard Sinnott</name>
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<name sortKey="Barrett, Timothy G" sort="Barrett, Timothy G" uniqKey="Barrett T" first="Timothy G" last="Barrett">Timothy G. Barrett</name>
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<div type="abstract" xml:lang="en">We developed a variant database for diabetes syndrome genes, using the Leiden Open Variation Database platform, containing observed phenotypes matched to the genetic variations. We populated it with 628 published disease-associated variants (December 2016) for: WFS1 (n = 309), CISD2 (n = 3), ALMS1 (n = 268), and SLC19A2 (n = 48) for Wolfram type 1, Wolfram type 2, Alström, and Thiamine-responsive megaloblastic anemia syndromes, respectively; and included 23 previously unpublished novel germline variants in WFS1 and 17 variants in ALMS1. We then investigated genotype-phenotype relations for the WFS1 gene. The presence of biallelic loss-of-function variants predicted Wolfram syndrome defined by insulin-dependent diabetes and optic atrophy, with a sensitivity of 79% (95% CI 75%-83%) and specificity of 92% (83%-97%). The presence of minor loss-of-function variants in WFS1 predicted isolated diabetes, isolated deafness, or isolated congenital cataracts without development of the full syndrome (sensitivity 100% [93%-100%]; specificity 78% [73%-82%]). The ability to provide a prognostic prediction based on genotype will lead to improvements in patient care and counseling. The development of the database as a repository for monogenic diabetes gene variants will allow prognostic predictions for other diabetes syndromes as next-generation sequencing expands the repertoire of genotypes and phenotypes. The database is publicly available online at https://lovd.euro-wabb.org.</div>
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<Month>08</Month>
<Day>16</Day>
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<Issue>7</Issue>
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<Month>Jul</Month>
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<Title>Human mutation</Title>
<ISOAbbreviation>Hum. Mutat.</ISOAbbreviation>
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<ArticleTitle>Monogenic diabetes syndromes: Locus-specific databases for Alström, Wolfram, and Thiamine-responsive megaloblastic anemia.</ArticleTitle>
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<MedlinePgn>764-777</MedlinePgn>
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<Abstract>
<AbstractText>We developed a variant database for diabetes syndrome genes, using the Leiden Open Variation Database platform, containing observed phenotypes matched to the genetic variations. We populated it with 628 published disease-associated variants (December 2016) for: WFS1 (n = 309), CISD2 (n = 3), ALMS1 (n = 268), and SLC19A2 (n = 48) for Wolfram type 1, Wolfram type 2, Alström, and Thiamine-responsive megaloblastic anemia syndromes, respectively; and included 23 previously unpublished novel germline variants in WFS1 and 17 variants in ALMS1. We then investigated genotype-phenotype relations for the WFS1 gene. The presence of biallelic loss-of-function variants predicted Wolfram syndrome defined by insulin-dependent diabetes and optic atrophy, with a sensitivity of 79% (95% CI 75%-83%) and specificity of 92% (83%-97%). The presence of minor loss-of-function variants in WFS1 predicted isolated diabetes, isolated deafness, or isolated congenital cataracts without development of the full syndrome (sensitivity 100% [93%-100%]; specificity 78% [73%-82%]). The ability to provide a prognostic prediction based on genotype will lead to improvements in patient care and counseling. The development of the database as a repository for monogenic diabetes gene variants will allow prognostic predictions for other diabetes syndromes as next-generation sequencing expands the repertoire of genotypes and phenotypes. The database is publicly available online at https://lovd.euro-wabb.org.</AbstractText>
<CopyrightInformation>© 2017 The Authors. **Human Mutation published by Wiley Periodicals, Inc.</CopyrightInformation>
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<Affiliation>Institute of Clinical Medicine, The Panum Institute, University of Copenhagen, Copenhagen, Denmark.</Affiliation>
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<RefSource>J Clin Invest. 2010 Mar;120(3):744-55</RefSource>
<PMID Version="1">20160352</PMID>
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<CommentsCorrections RefType="Cites">
<RefSource>Hum Mol Genet. 2014 Sep 15;23(18):4770-85</RefSource>
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<CommentsCorrections RefType="Cites">
<RefSource>J Biol Chem. 2003 Dec 26;278(52):52755-62</RefSource>
<PMID Version="1">14527944</PMID>
</CommentsCorrections>
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<Keyword MajorTopicYN="N">Alström syndrome</Keyword>
<Keyword MajorTopicYN="N">Monogenic diabetes</Keyword>
<Keyword MajorTopicYN="N">Thiamine-responsive megaloblastic anemia syndrome</Keyword>
<Keyword MajorTopicYN="N">Wolfram syndrome</Keyword>
<Keyword MajorTopicYN="N">genotype-phenotype analysis</Keyword>
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